Scaffold Ga0068876_10190488

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10190488
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1193
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_101904881	F002162	AGGA	MPNYDYACDIEGTLIILELPMDHEIPQCQVCNTPLRRVYVAVPTIFKGTGWAGKDG*
Ga0068876_101904882	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGIRVEPSTVTCDLCNDDRLLHEGDLLRCYSCHTINRIPYHA
Ga0068876_101904883	F002357	GGAGG	MAFNLEDYEDVATLNKWFISNYPMGRSDISVISHDAEKGYILVQATLWRDAKDTSPAVSNIAFGSRETYIPNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMRKVESNPSFKDKLESRQNMYGKAGSKSAQIETILRDSFAADKPADPVVWSVGEVVDQIAASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKACEPKWAKLTANGKWYFEGGE*