Scaffold Ga0068876_10114971

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10114971
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1598
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F005745	Metagenome / Metatranscriptome	391	Y
F015988	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_101149712	F001019	GGAGG	MTYGPSLEILEVAYEVSPGGVRTFEIYDKSEIEPVQIPIFETESLTEAVEFCYNLGKDFIVKTYAEWEMRELLADL*
Ga0068876_101149714	F001781	GGA	MTFHLQLQKGIMLMKPQDKDKLNECLDILDTTDLGLSLVWLWTWSTIKNFMADETFIMKKTEDEMWECLCEAVEAGHGFSLEYGAEQHHEDVMEWMLNRDYMVDSMFEDEEDEDEDE*
Ga0068876_101149715	F005745	AGGAG	MQTDPTPLDDRLKRMVNLKVPGIDIMHGELKMRMLEAEAELTEAQRIEEENDYSDAMESMERKYWEGYFDALVLCYGLTYDISFAIAERDNADEATR*
Ga0068876_101149716	F015988	AGGAG	MTKSSKFMEYMKIHLISLEQDLENISQEMELLDPESKACKELDFEYNHMSGQILTARHFLSVATDIMNETKEN*
Ga0068876_101149718	F001460	GAGG	MLGYTEEDLNRMINAVHDAKLFYLRSPSDLMNKDPLVKDLEDAVSFLQGLWAEGYFDYANN*