Scaffold Ga0068876_10092286

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10092286
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1811
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F019614	Metagenome / Metatranscriptome	228	N
F029411	Metagenome / Metatranscriptome	188	Y
F040616	Metagenome / Metatranscriptome	161	N
F085603	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100922861	F029411	AGG	MNVDFSTIDPQNELSDLYTPDYREQAPNEDGYLDQSYEDRFELPCMEDYQ*
Ga0068876_100922862	F005293	N/A	MNVDSVPFVPTRDDLIGFISDTYKEINGFRPRPNWSELTYNQLDQWGQRLSAEVVTYRKQEVIRNRIARGLRRAQQRAWVEKKRGYFTPATFTLGNVVNF*
Ga0068876_100922865	F040616	N/A	MDPEDIAYEDSVSSDTAGWPGDGSGEDDFQDYNQNEAGDYYNE*
Ga0068876_100922866	F085603	N/A	MNVKIEFNTDNAAFEDSFLMEVTRTLQQCKSALLDSERGTITIRRPIKDSNGNRIGVVNIGNN*
Ga0068876_100922867	F019614	N/A	MNTASIATNKIQVEYSAIPGDNREFLTFSVPNGWDDVKKLTNKVLTYNNKDFTFSGWNSDRNECYFVRLVNGPSFVAWIK*