Scaffold Ga0068876_10089357

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10089357
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1844
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055421	Metagenome / Metatranscriptome	138	N
F055422	Metagenome / Metatranscriptome	138	N
F069678	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100893571	F069678	N/A	LVDTVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPGWSINGTRRNLSKPIKCRNIGLPTNSSESESENEHLDDRINAGTAHTDR*
Ga0068876_100893573	F055422	N/A	MNNWRFRRRTFPLIRREAHSRVEAIPIANIDMLLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHLRNASPSNRSRNPSGRNRDSSDIDNYSETEPLITEV*
Ga0068876_100893575	F055421	N/A	MEGATNPYKEISIGTHLVWITIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGAILTIYLKFNSMTRIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFITVAICLPSGEEIESNLIKLTIGY*