Scaffold Ga0068876_10073064

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10073064
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2065
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100730643	F003863	GGAGG	MESKQVSGRQVVHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWSINPDSRLTVGIHTRANGAPPFGDPADAGEDEGNYGGEA*
Ga0068876_100730644	F001477	AGGGGG	MSNIYTIHPKKSPLILLYEVVDENGNAEWGGNNAEHCMQWLSLAPSNSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL*
Ga0068876_100730645	F000821	AGGAGG	MNEEYLSAKANLCLNQAQEDLKQEEIAKAIKNLERANSALYRLGLVREGEGDE*