Basic Information | |
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Taxon OID | 3300005527 Open in IMG/M |
Scaffold ID | Ga0068876_10064733 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2210 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003691 | Metagenome / Metatranscriptome | 473 | Y |
F008359 | Metagenome / Metatranscriptome | 334 | Y |
F080039 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068876_100647333 | F080039 | N/A | MSKRQLDHSLVCDKIGFDWANKKMMIRVYDSLLYVMEQSILKPTWTAIVKHMLTMDGQLGKVSVNGYYSTIRKNLKDIGVIKYNGRKGLEKGPNWDRFFGDEDWSWFITNTNSGGYGTIIK* |
Ga0068876_100647336 | F008359 | N/A | MSKSKLNVKSNYSIKKVKRVMRMKSEGFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTLGIVKNIMNEIKMK* |
Ga0068876_100647337 | F003691 | N/A | MYMNSRMTNEFNQFTETAYNTSRNERPIYKNFAATKLSSAVKPNSIVEFTDFMGRKHKVAVRNNTELKKQMKFFGMLKKEATTIKQIISQYPIKLGKVEKRFIADCKRELKQFGLTKKAIDIVLG* |
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