Scaffold Ga0068876_10061206

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10061206
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2281
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F004666	Metagenome / Metatranscriptome	428	Y
F008305	Metagenome / Metatranscriptome	335	Y
F068492	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100612063	F004666	AGG	MTTKREYLASKGITVGKRGRFSGAAKQALSEAEKNGIKFTAEAKLTK*
Ga0068876_100612065	F068492	GGAG	MSYKTDTLDPRLQKLVDMGETGTDILHGELKNLMYKAEQEYLEAKRIEEENDYDDAMESMERKYWEGQLDALTGIYTLTYNLSFAINERAQKRG*
Ga0068876_100612067	F008305	GAGG	MLGYTYKDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYISEDV*
Ga0068876_100612068	F000868	AGGA	MAETSFLDNENQMVIDAELQTIAEQLLDDWMYENLNEGQFYADWRIADMSDSNYLKGRFNKHYNLNKDDEYYIEWDEEK*