Scaffold Ga0068876_10042699

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10042699
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2790
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F026794	Metagenome	196	Y
F057879	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100426992	F009945	AGG	MSTALYTFKRTHGVATHRLAGAGHRYPVMAYFEQITMKDGTRRAFTELAHEYSMLELRRRDKVADADTELEACKLLAERNNLDWPDETKPKRK*
Ga0068876_100426995	F026794	GGA	MMHSGDNPNSISERDLRVSASQQFFDGLDIREATRGEATFDERDRDFADPFSREELTALLPFITAFCEGRVVWAYELKERHGRPMPTWTPINEWDAHYKPQCLSLEYRTDNPFAQQL*
Ga0068876_100426996	F057879	GGA	MTEPSTEPTNPRDTVRPEPVPAGGEQESESPFAGAAQVPPWEL*