Scaffold Ga0068876_10040599

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10040599
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2870
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F019123	Metagenome / Metatranscriptome	231	Y
F030690	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1004059910	F003066	N/A	KKEPVAWLYEEYDVKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLIPGEPVEEYKGLSRYDSKRLTEAYGGL*
Ga0068876_100405995	F030690	AGGA	MQRSEVEIICNHMLGRTIVSCEALHGDSTIVIELDDDSIIEISGEELSLYSELTPLDD*
Ga0068876_100405996	F002037	AGG	MNKIYWVFIVVMAALAIWGTEKAIGQTTTIYAPDGSVTVCQVNTNGTVICL*
Ga0068876_100405998	F011384	GGA	MYTKLDDQRQAKFINEYMQEHPNCTIKDVIQGCVTNRVRLKYLESQGYFSLPKPLEHKEILDRRFKNRNYVSVTVGREYGKWIGY*
Ga0068876_100405999	F019123	GGAGG	MVDSNPLTQEEIIKAYKEAFGSGNAVLTLDRIFRFARLIEQAHGIKNVH*