Scaffold Ga0068876_10039567

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10039567
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2912
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F011754	Metagenome / Metatranscriptome	287	Y
F042301	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100395672	F042301	AGGAG	MVKEGSRWEGNNGQKFHVIHVIEIEGHTWVHYIKENAPEDSNREYSCYEESFLSRFREQPND*
Ga0068876_100395673	F011754	GGA	MKIGFSLGRCVRDIVKGSVDINDVAFIIAATSIHDEPQLANVIEQYMYRDDDYLYGLDESKCQEVALALWSTNKILQPRRQGLHRHRQPENSVWVDMFPTELSENHSVKSAWDAYRFMLHMTENVDNESTEVFKQ*
Ga0068876_100395674	F001008	AGGA	MSRAKHKPYQWIDGETADRITSLNLKDYRAYLKKELAQWKKNPKTEDNPDGYWLHPEDVTGNIRRIEALNLIIKDFITTSDEIK*