NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10034111

Scaffold Ga0068876_10034111


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10034111 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3158
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F003542Metagenome / Metatranscriptome480Y
F009005Metagenome / Metatranscriptome324Y
F010683Metagenome300Y
F082161Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_100341111F010683N/AMATKKTTKKSVKPAKKAASKKAVAMNIIKHKRVVMELVGTESLPEMVFVSAAPAWAKSIVGKRYVNETRAKAVIEALDAEKLISKGAKSVLKEMDAAGITPLDVDSI*
Ga0068876_100341114F003542GAGMKENFDYDLFDSKIGYDSYNKLYLIRVYDLLVFEMNTNPAPTWTGIMRKMLGDNPTGLKPSGYYSSVRRSLKEIDVCKFDSVKRCMVKGSNWDRFVSDEDWSWFIMRTGSCEYSEVIK*
Ga0068876_100341115F009005N/AMSESEMIQRATLLGMDEELISYALHIQRQLGSEGDTADWLDCLEMAYNELIVNR*
Ga0068876_100341116F082161N/AMRGKKVGPGEQVATNRAMHCNMQLFENEAGEYYPVVERLPQPTLVRGEYHPIGNKFQYPKQWGRKYAAKVLLENKIAVQQDILYRAELELSKLQRCLDGIQQWSDSDE*
Ga0068876_100341117F000785N/AMRVTNKRLGMKFDCVKLLNWAEELLGPSKCKSIAFTWDSEEESLGWYNWDETIWINLASCKRMISVQKTILHEWTHAQQTFRWYNHYQMKYGYKNNPYEIQARDNEKLVKRAYKKRK*
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