Scaffold Ga0068876_10032706

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10032706
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3230
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F005630	Metagenome / Metatranscriptome	394	N
F011392	Metagenome / Metatranscriptome	291	Y
F027843	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100327061	F011392	N/A	NELIYSLGITAHNGNFCNREINESLLEKLYYELNSRIAEEAIDEEVESSTYYVSNEEADEDYRVSMLQDAQRYESSVEKDYDNHLNKLKQRGYITQALLDYVDNRGAVSHGDLERYYKILTGGSNSFSHILNNLRTPYKNRKTQRYIAKEGKRYSDAKYVIKVANPSNWVVA*
Ga0068876_100327062	F005630	N/A	MANLYEVEGFYGSRNRGTILVYETFSGKRWYCVEGSCNINCTYDEINEGCDVERISDIDTMSSRDGIYSARELCDFVIN*
Ga0068876_100327063	F002303	N/A	MDIREQCRERAIEFAKEWGYENVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLSMSRADTECRNNIFLLTMCNMNCYLNGF*
Ga0068876_100327068	F027843	GGAG	MQIKFLNANGSMWVVKKEFKADSWFVQGLFANKFTAEEACKWYCVEKLLRDSNNTHFLVNEVSEAQIIEDEVQS*