Scaffold Ga0068876_10031379

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10031379
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3307
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020140	Metagenome / Metatranscriptome	225	Y
F025688	Metagenome / Metatranscriptome	200	Y
F053245	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100313791	F020140	N/A	MTHKFAVVIDKTFYNKVQNNNDFYLRVIVLDVIRALVDESEATEKYSNKLFYKCAKSIASEVKVFEDESSIIFYLELSSGYLEDFFEKPLDDLD*
Ga0068876_100313793	F025688	N/A	MKFILNVDGTNTGGKFLENYVGQQVDIESLYKNIDVNSPPLATLKTEDGKQHSIQLIDVRFIGEYIFIHCFAIQHDDKHGGKVLLRLKPVFDLENIVNP*
Ga0068876_100313794	F053245	N/A	MKQVTINIGDDDLKEIANIFKNEADFKPQAKQDYLIIEVLRQVLNNPKMEVNNTIDL*