Basic Information | |
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Taxon OID | 3300005527 Open in IMG/M |
Scaffold ID | Ga0068876_10031178 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3318 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000785 | Metagenome / Metatranscriptome | 891 | Y |
F009960 | Metagenome | 310 | Y |
F023789 | Metagenome / Metatranscriptome | 208 | Y |
F027513 | Metagenome / Metatranscriptome | 194 | N |
Protein ID | Family | RBS | Sequence |
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Ga0068876_100311781 | F027513 | N/A | VHTEKEQSKEKKTHKNTAVKPGEQVASNRAMHNDMVLMENSEGEYDAVVIRGDRYALIRGEYLPIGKNFHYPKVWGRKYAATKLVQMIMDDKRKQIEDAE |
Ga0068876_100311782 | F000785 | N/A | MRVSNKTKGMRFDCNRLWNWAHEKLGESKCQAIAFYWDMDPEAECGYYDWEKTIWINLAQCKRMISVQKTLLHEWTHAQQVWRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYRKRTK* |
Ga0068876_100311783 | F023789 | N/A | MDTNHTHNLTQTERLELQIKIQRLQWLLKECIGIEEYELCSQIRNVIQRKYELLATNTNQNEIE* |
Ga0068876_100311789 | F009960 | N/A | MLTIENISKINGYSLNVKGNSYYFKGWDNTTSDVAHFTLKDDVSASNPMIKVTLYKKGRMVFDDIQKKDCYVYGVAVDGLTFHYTKERLNTPSEFRNTIEQILNGI* |
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