Scaffold Ga0068876_10031178

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10031178
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3318
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F009960	Metagenome	310	Y
F023789	Metagenome / Metatranscriptome	208	Y
F027513	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100311781	F027513	N/A	VHTEKEQSKEKKTHKNTAVKPGEQVASNRAMHNDMVLMENSEGEYDAVVIRGDRYALIRGEYLPIGKNFHYPKVWGRKYAATKLVQMIMDDKRKQIEDAE
Ga0068876_100311782	F000785	N/A	MRVSNKTKGMRFDCNRLWNWAHEKLGESKCQAIAFYWDMDPEAECGYYDWEKTIWINLAQCKRMISVQKTLLHEWTHAQQVWRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYRKRTK*
Ga0068876_100311783	F023789	N/A	MDTNHTHNLTQTERLELQIKIQRLQWLLKECIGIEEYELCSQIRNVIQRKYELLATNTNQNEIE*
Ga0068876_100311789	F009960	N/A	MLTIENISKINGYSLNVKGNSYYFKGWDNTTSDVAHFTLKDDVSASNPMIKVTLYKKGRMVFDDIQKKDCYVYGVAVDGLTFHYTKERLNTPSEFRNTIEQILNGI*