Scaffold Ga0068876_10023517

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10023517
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3877
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F006181	Metagenome / Metatranscriptome	379	Y
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F019614	Metagenome / Metatranscriptome	228	N
F082581	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1002351711	F005293	AGGA	MNADSVPFVPTRDDLIGFISDTHKEIVGFRPRPVWDTLTYQELDRWGRQLSAEVTVYRKQQVVRNRIARGLRRAQQRAWVEKKRGYFTPSKFTLGNLVNF*
Ga0068876_100235173	F015582	N/A	MNTANNIDPDLLAEQTQDALYLEELNHYVSTLATPSAEAVALYSAKLSMLEDIHTEIRNKYPDFKPIYDPSMDAELNQDLGKYQEMTYSFSNRDLSGNRSE*
Ga0068876_100235174	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIRKENGVAIYQRFNTDGTPRSYEVFIIKTVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCRTLANAEERFDQLVIKAKDSAEAKEEAAKTGVRNRGRRGSSKKIKLDMTLNKGTKFTAKFLMTVLGVTQPVLFPIIKQWEKDGVIKANGTVKAEGKGRPATEYIVV*
Ga0068876_100235175	F082581	N/A	MNNVSTDSNMNSTSTKSSAKRGRPAKALKLILNKSFTIKDLQTLNPDIKFVTIRAAVLRGLSNGKYTKLPRNVQTGKKGKPANIFINTKVYKANLANLAKSKAVATVTAEVVTA*
Ga0068876_100235176	F006181	N/A	MKKNLIHVIYPDEAVYSYVVTNNLSPEDNLERVFAEWNSGSGMECKMFIESNKRSLSVNDIVCVNGKYFQCQSVGWTEVTSEYVNQLEKEVAIHPLRFVGDGRSAWFALNELMRNRSTNLVEELV*
Ga0068876_100235177	F019614	N/A	MNVASIASNKIKVEYSAVPGDNREFLTFSVPNGWDDVKRLTNRVLTYNNKDFTFSGWNSDRNECYFVRLVNGMSFVATIK*