Scaffold Ga0068876_10018951

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10018951
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4371
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F001881	Metagenome / Metatranscriptome	622	Y
F008358	Metagenome / Metatranscriptome	334	Y
F039496	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1001895111	F039496	N/A	MTDISKLSFKQLQALEKQIEERKQVLSESKDCVEGYKVTFCVKFNPATNPYSDLRSPEDFGDYLANEIANVLVNDFGLRQSDVSGFEVEEMTDEYKVEWKDFWEDEE*
Ga0068876_100189512	F008358	N/A	MNSTYIYFVIFFCIAYLIVTDQSVARAFYMLTQLAKVEYEKTKWWILHNPANPIVKYLMWRRAYKLAEELQREIESRNK*
Ga0068876_100189516	F001881	N/A	MTTRVQEFMNAVWEHRNNGADTEEKLVAAILFIAAENIQFYNAQDGRIVLDKNDMLQLAQELEE*
Ga0068876_100189519	F000919	GGAG	MRFREVQFRWSEFNKKYELVRWYKDCNDKELCYVVAFFDETKEGYDMRTVGDRFFEDKDAFIVGKHAIEFLNSMFYELQREEELK*