Scaffold Ga0068876_10015313

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10015313
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4927
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (52.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031096	Metagenome / Metatranscriptome	183	Y
F054874	Metagenome / Metatranscriptome	139	Y
F103267	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1001531317	F054874	GGAG	MVKEVKGGAFATADMNLLKRALLCYKDTLVESEESERNVSDELAKVANLLHRIGRIA*
Ga0068876_1001531318	F103267	GGAGG	MEVEVYSFPTMENPKAVEITYCELLNAQRRGETLPVEALDWMDSANTWLLESK*
Ga0068876_1001531325	F031096	N/A	GGAFELRTGRKWTWGISPFREGEALKLRWEKVGPIGGRHFFEIDGVQYSAKKISPFIEGIQMHG*