Scaffold Ga0068876_10009311

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10009311
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6546
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F003784	Metagenome	468	Y
F009331	Metagenome / Metatranscriptome	319	Y
F016642	Metagenome	245	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100093111	F003784	GGAGG	MYDDDRERMGHNATDFAAYGLSHLAPRQEDSDNTDTPAANPLVDHAAVTGYRALGVSTEDLTSFIESFASLRAMRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD*
Ga0068876_1000931114	F001094	AGGAG	MNKEKLIAMAGTYLRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKSADFGRGSK*
Ga0068876_100093113	F009331	AGGAG	MICENCMKGGEENSLSHYKRASNWHDKCDFKGCVCQHKTGPGYVKREGSKVPLMQTQSP*
Ga0068876_100093114	F016642	AGAAG	MIVQLSKDEVRVCTLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRAKLPDVGNNFEVRTVRTRDSIPFWNKDNGKIIVGTKILDEDYYSQVEVYGYCNPEEYATSHYRDETISGWRVPVTELKEFK*