NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10008357

Scaffold Ga0068876_10008357


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10008357 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6950
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005092Metagenome / Metatranscriptome412Y
F013526Metagenome / Metatranscriptome270Y
F015730Metagenome / Metatranscriptome252Y
F024314Metagenome / Metatranscriptome206Y
F026861Metagenome / Metatranscriptome196Y
F029721Metagenome / Metatranscriptome187Y
F056558Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_100083571F005092AGGAMDKLEYALRQIAACNFCNGRGVDYFGNGEDYDFEDCLCNPYGLILDEDGSVIFDNGLLSEPELFATMEAN*
Ga0068876_1000835710F015730AGGMLTEKTLNKIVYEYQHGGVQNYHPEISLSERKALLKYLFSLPSKCAPECEANHTA*
Ga0068876_1000835714F056558AGCAGMGIGFLDNLENAWDENLSLESSTIPQTDAMGREKFWEDLGRPEYPNLAVKIFSETCCQNCSCKNG*
Ga0068876_1000835715F024314N/AMDEEQKLTPEQAQAILLFQIEQKLRFAIAKQVEQKFHGRYHNASHDIAQFIRNMA*
Ga0068876_100083573F013526AGGAMKKNVLISFITESDTDLGAVFDLNKVFLALPESDLVKFDVFDVLDVEENK*
Ga0068876_100083576F026861AGGAGMKLDEFKKLIEAQRREIQLTNLEKIATIVSTTNKKEKN*
Ga0068876_100083578F029721N/AMRSYSIEDLLVGQFYRPTSFARKYQGGEINYATKRDDVWVGTEYQAYSIRFNGHKWATIAVRVSDL*
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