NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10008060

Scaffold Ga0068876_10008060


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10008060 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7083
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F011484Metagenome290Y
F013279Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_1000806012F000821AGGAGGMNKEYLQAKADLCLNQAEIDLQQEEIARAIANLRRANSALSQLFGFEEEDSE*
Ga0068876_1000806014F001477AGGAGGMSNIYTIHPRKSELILFYEVVEPDGDNTWGGANAEQCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQTLDITEIVRAASL*
Ga0068876_1000806015F003863GGAGGMESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGIHTRANNTPPFGDPADAGEDEGDNGGEA*
Ga0068876_1000806018F013279AGGAMQYDYRCPDCNSVLTIERSIHEEPREPSCFDCHIPMVRKWDSPAITFKGKGFYSNGG*
Ga0068876_100080607F011484GAGGMKELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLNLPQIMKEREGK*
Ga0068876_100080609F003212GGAGMKDRYLVTLEIETYDGDPRAWDWSTLLGHEDQVEIIESQWKGRVLPTNEGEGNDL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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