Scaffold Ga0068876_10007959

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10007959
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7134
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F014847	Metagenome / Metatranscriptome	259	Y
F015581	Metagenome / Metatranscriptome	253	Y
F016528	Metagenome / Metatranscriptome	246	N
F024308	Metagenome / Metatranscriptome	206	N
F024548	Metagenome / Metatranscriptome	205	Y
F028095	Metagenome	192	Y
F028145	Metagenome / Metatranscriptome	192	N
F041194	Metagenome	160	Y
F065436	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000795911	F041194	N/A	MDNLQITCNYCDMPAKLKRDKIYMQCHCCDDRRIIDIREYLLEDKHHDYLYSMFSDNFVYNDDKA*
Ga0068876_1000795915	F016528	N/A	MINNNELFAKVLAENPLPYHFGDKVNTNRGIGFISGYNFKDREKTWKFTIRPFGLPNYYIDVETVYGKVE*
Ga0068876_1000795916	F014847	AGG	MDFESNEDILRDLMDNIRNLHEENSRLMQEVEQLKEENKELNRKLKSIQSIFL*
Ga0068876_1000795917	F028145	N/A	MKLFLAFIVNLILSLGTSILLYHLFKVDVSPVTISLATITIYMFLPQRFHDWIAK*
Ga0068876_1000795918	F000962	GGA	MNIHVPEEIKKKYPHMEFRGKQRTLNDRTVMEAYNHATNQNFFYSFEEDFFWFPSQIPDYKLPKI*
Ga0068876_100079592	F065436	N/A	MKYKYTIKIHTVIDYSDLEKIMNDYGTKGYRVVKAEFVGDVFESGRPMKKFVVYLEKKINK*
Ga0068876_1000795920	F028095	N/A	MSEQTYMKLQDKVKRPKFSRENINRENKHFNRVVDQYINWCTSGGGYEETQETYEQDIIDCLFESDTDGFTLAQYLSEYKYIEPDSELVYILDGVSTIKDSLTKEIIGQWTKENFLEIPSDVIGKKVNAKQGYKKYENHYITGIKPETYEVTVNDDINKKGGWVIRYEDITLL*
Ga0068876_100079595	F024548	N/A	MKSADNVVELTESDIKKYTKLKEGIKIEVADLVHIYDNFYAKLSKGSIVCKEVVNKHSTILRKK*
Ga0068876_100079598	F015581	N/A	MSELTKPNAFVFKAFIDNEYKLCVCPRINNKWSEADIVYIQDYDGAFDDVLHEKYFSVLFVGYEKTDDTNGKFTLKNVNAQYIKSDKAIASDMYANNSFFSTIEKGYQHFYEQSITSEREGIVSQTSEQENL*
Ga0068876_100079599	F024308	N/A	VKKVILTKIEYEFLIECLEKLEKHTDDSPVDSKWFEKMDTTRRLYELELDHFNIKKYGDPSTKYQMVKWLLTKVKTKSLDF*