NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10007181

Scaffold Ga0068876_10007181


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10007181 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7521
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F005348Metagenome / Metatranscriptome403Y
F012455Metagenome / Metatranscriptome280Y
F015434Metagenome / Metatranscriptome254Y
F023275Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_1000718112F012455GGAMLNEIKNKIIRIQELRRSNAATPIPNKKKYTRKVKHKNGK*
Ga0068876_1000718117F005348AGGMINSVMAFDCNDCNGQGLIFWGNDLDYDVEKCDCKDFAIGTLFTSGEAN*
Ga0068876_1000718121F000808AGGAGMEYTYSLTTSYDGELINTLRVSDMLTAVDAWNKCVDYGFAKEYATYNLSDPTGKMYTKTFYANGEVSIK*
Ga0068876_1000718124F003393GAGMIDLENDDTIQIVDYVKADILTAGQLMIDDCIQVADEVVSIIDIVSLPDGYTLEVVNDFGERDIIEVGEYDQFDLMVLQ*
Ga0068876_100071816F015434GGAGGMESNYPEQWHRHTPKGMSIESTTTKSKKCCDTCECETTPDFNKLMETQTSFEE*
Ga0068876_100071817F023275N/AMAFLENLESSMADGDGMPSKKVTDAIKEMLEDPEHHKLMERLKYMEDHGI*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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