Scaffold Ga0068876_10005077

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10005077
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9149
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (23.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048940	Metagenome / Metatranscriptome	147	Y
F054636	Metagenome / Metatranscriptome	139	Y
F058096	Metagenome / Metatranscriptome	135	Y
F082582	Metagenome / Metatranscriptome	113	Y
F084145	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000507715	F048940	N/A	MQTLQMTAAQRMEKQFFIQMIQLVNEVQGKQKLPSQVNSSRKSAWCKKVSNPKQKKDALARI*
Ga0068876_1000507718	F058096	N/A	MNAQLTIDECKLMWVVGALQRLATLGMIGPDIPLKLSGSAVDDYLYIDEHREILFESDFEIASIFTALVNSECDPKVQNPDDTKPLIELLLQYKNNRTEIVKYALSQQVI*
Ga0068876_1000507721	F084145	N/A	MFVICPASFDLIDAEWFDNVYEAKDEALDWSVELSGENVIVYRAVEEDDGAYEFDKLYAISA*
Ga0068876_1000507722	F082582	N/A	VEGVAPTRKRPNSILIKMTVDFSRDVMVGMLRKGDTGNDILDILNVLVPDQTELTREQVCEDLGIADCPENDDEIARAMVAA*
Ga0068876_100050775	F054636	N/A	MTMRLEIDDYEKDLLIDTIQHRLDTDKILVINNSLKEELEDLLRKVEEDEYV*