Scaffold Ga0068876_10004869

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10004869
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9363
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (44.83%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F013631	Metagenome / Metatranscriptome	269	Y
F053990	Metagenome / Metatranscriptome	140	Y
F073458	Metagenome / Metatranscriptome	120	Y
F081258	Metagenome / Metatranscriptome	114	Y
F085684	Metagenome / Metatranscriptome	111	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000486914	F093764	N/A	MARRNKSASRQMVENLQEQLVEYFQENIFDDCDYEDLTGSDLLEALVGTFRELESEIQKKMNPIQYVLNKIDPEDSESQVLNG*
Ga0068876_1000486915	F073458	N/A	MSAKLIALASEIVDTNPAGAQLIVSLTKAETGAELIEALDNYDSTVLENYSEPVDSEDEGEVTLTDADGIVTSV*
Ga0068876_1000486916	F053990	AGGAGG	MIDTCVLHDDYEDFAKKFLGVDYEDFIGLQLGLPDEDEIEIEYSLSI*
Ga0068876_1000486921	F085684	GAGG	MVSNTVYAYSEVERAYKILKELVERENKLHMMDMTINLQHLDVIQYEILPALEEIVYFDPTP*
Ga0068876_1000486925	F004208	GGAG	MTYNLNQEAKAFSYTREELFKCIVKIVAHPHKTITEHDQSRALAIMVVFDDYFSNYTESDNNGGYYVYEQESTDFTDFVRFKLGISDYDAVAVDEMLK*
Ga0068876_100048693	F081258	N/A	MSFTFLRLSAGIYEVQKDSNTVGFIRKASAAKWIVVDVVDTPQQVTKTLKEAKDACVNLIIFDVVDKTPEPEYNDSVGVDKVNTELNKVVEGSLNCYKQVEGTDEFVKVSPTEFGFPEPTLEPIEF*
Ga0068876_100048694	F013631	N/A	MSTDPPDALQYRDTSKGDHLADLDTIFNYTTSRWDWHEGNVNQMWIQEIEESPDFYRYIAVAYNPRKNVSTVVSEPRCYADTLNWVRMYCGNFCILPEYCY*