NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10004246

Scaffold Ga0068876_10004246


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10004246 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10125
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.13%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022640Metagenome / Metatranscriptome213Y
F033413Metagenome / Metatranscriptome177Y
F041726Metagenome / Metatranscriptome159Y
F055691Metagenome / Metatranscriptome138Y
F058109Metagenome135Y
F105081Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_1000424614F041726GAGGMKTYRMLIEYWVPDEDENLYEEKIIQSRSSCGKIADDYLAQDRTNLIRSVEVFPV*
Ga0068876_1000424618F033413N/AMTETLFQKSINLTGDFITDFTLTFKSSIFDKYTRNDGKVYIKHSVDRNFKNDVFTVEAMIYEYKGCWCGNQKNFGTFDNFADAISCARNVNLSEDTLSEDGYLSLMRN*
Ga0068876_1000424621F022640GGAMRIAFLIATLALGLRFGLIAHATTSEYQERQADQFCQINPNYCK*
Ga0068876_1000424623F105081N/AMTLSQDQLSKIVQLYAERVVDNMDVRDLCAFAIDTICDSMIDYKESELMEELSHYYDDDELQELVESVTTESTRNK*
Ga0068876_1000424624F055691N/AMMTYTSPLTSKVYEIVETSHTRNAWDSQGNLTPYVQSVFDIYHEGKKVQFALTAEGVADSVAHLENPGPDVSSRFD*
Ga0068876_1000424626F058109N/AMIETDFFILDGQQYQQFYTEASQLGITIDYYLLEFCQVEGPTILVSND*
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Institute for Fundamental Biomedical Research
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