Scaffold Ga0068876_10004149

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10004149
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10241
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F021097	Metagenome	220	Y
F029735	Metagenome	187	Y
F087065	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000414910	F087065	AGGTGG	LKVYRGLRIRNNAGKPHESTGTMTTKAKAYQFNWRKEVGERPTDQNQELFHSLVEQATVLIEEFSSVEFIYSEVRQVCQPAYLFSVVCDMRSDKLSMRIHTTEEGWKVITIHKV*
Ga0068876_1000414915	F015587	N/A	MTALNIRKNLASILVNTAAAVENVKVPTKAGVTEKLNEYRTRAAALIMPNDMAFIIQPKQGN*
Ga0068876_1000414916	F021097	AGG	MQRNYFSDACVAIVCGTGLGLLLSVGAQKVLNRHYKATCHNQPGHNLIYTKSILGDTYYCINSKYMN*
Ga0068876_100041496	F029735	N/A	MAKDHRLALDRYIDFTKDPFLVKRKVDFDDSFSSKPSTGKAPWMPSRFTEDDLLRRVQTRKLQLNPGLNFVGNSPEEYEVFANIGRFTRKEGYNFEEGRPNTALRPEDQPGFSPIWVEAYRISPTVKPEKRASNPMPRVNNPDPKGYMMAAAEQRALKEAEGDKSVAQLMSSTPEDKAAILERNNEDVNKA*