Scaffold Ga0068876_10003578

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10003578
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11081
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014955	Metagenome	258	Y
F031406	Metagenome / Metatranscriptome	182	Y
F063332	Metagenome	129	Y
F074572	Metagenome	119	Y
F085188	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000357812	F014955	AGTAG	MTLEHYIVGATGIGYLVVGVLQLSKGSMSNALIWIGYAAAQIGLWINLK*
Ga0068876_1000357813	F085188	GAG	MSKLLIIGNRLINPENVTYIIDREIHFNDGSRWVATEPEIQELLAIMFETPRPVEEEPIVVKKKVVKKK*
Ga0068876_1000357821	F074572	AGG	MRGFVISAFFFGILVGYVAGRMEWAHEDCYDATDKYQRYEAWLSVKNGTYRCFWIEKEYPWRVKMQGVIDVK*
Ga0068876_1000357823	F031406	GGGGG	MHHNEEARYHFIMMDMVDLIGDYGYDKVMDDLSTAIADKVNRLVGRAVMEDADETPF*
Ga0068876_1000357828	F063332	AGGAG	MTNNIENLSDNELNEIKAYVKGIIEGIKDTHKPEEIDFILEDYWTAWDNTIDINIWLDESDPKRYLTTLYRIHESGYTDMETFQRLDYIKG*