Scaffold Ga0068876_10003473

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10003473
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11281
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029679	Metagenome	187	Y
F098720	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100034731	F029679	N/A	MPGVYKEKSCKFCQTLHRKRGLYCSQSCANRDRPEYSANVAIAMRKVAEEYNKTPEAIAKQKQINTPLASLTADDFAIEIPDIKTLDDFDQYTDGFD
Ga0068876_1000347316	F098720	GGAG	MPNIHTILGQINPTANTQTNVYVVPASTAAVVNAIHVDNTGDANASYSIIVVPSTDNSSSPLPRHFVMRGSIAPSGDTVILDFPLTLPAGTVVAANTNNGSLAISAFGVEIS*
Ga0068876_1000347319	F098720	GGAG	MPNSLKILGQVNPSANAQTNVYVVPASTAAFVNSINITNLGSTNASYSIIVVPSTDNSSSPLPKHFVIRGASLPGDDEALLDFVMTLPAGTVLAANSNQSIAISAFGVEIT*