Scaffold Ga0068876_10003231

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10003231
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11774
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003904	Metagenome / Metatranscriptome	462	Y
F014128	Metagenome / Metatranscriptome	265	Y
F023343	Metagenome / Metatranscriptome	210	Y
F034088	Metagenome / Metatranscriptome	175	N
F063401	Metagenome	129	Y
F073452	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000323111	F003904	N/A	MNDVIIKIKSYLWFILIPVAIVTLLSISSLKDIEQGYARFKFGRDVTLYLRKSTDLLTYLGAAYTTTSDKKFLTQFNEHLKEREKYFNEEIFISKLLTQEELREFRKGLDISNELAKEVENQAFEKMDSKSFFSDKYLDYKKRIYDNNQSFRSLINDSSEEIIKQETIHLNIYLYLLCFIILGMVFLIKQETKSVIKTKRKVKRKK*
Ga0068876_1000323112	F014128	N/A	MEQLQKYGIQIGFLFSGLFGAILMATKADKTDVKSVVLSLIGGMSAANFLTPVLVDTLNVTNVKHQNGIAFIAGFLGLKLVEIVSEKFLEKVEGKKKTTRKTVKRKK*
Ga0068876_1000323113	F034088	N/A	MIEGLIAVNKVTVTKPVAIDGQLYIEVAVPNGWQSVKEIMNKVIEVNNIDFSYTGWNSDRNIACFKSNNRTIGIIKN*
Ga0068876_1000323114	F023343	N/A	MDTKYNSVKTVSFKVNNIKEDLAMLMFNRSFTLAQAGKQCVVCGNRADIFSCNRAEREFKISAICEPCQNEVFEPLDG*
Ga0068876_1000323116	F063401	N/A	MKKNLIHVIYPADKVISFVHNSDDTVENILEVVFGMFNHGSNSESELFLNSKCRSLSVNDIVLLNGKYYLCESFGWKEVTVDFVNKLEEEVENNPLTLAHGPWFGLGEVMWNRKKGELELA*
Ga0068876_100032316	F073452	N/A	MRRIVGKDKKGKKILINVPSYDQIVINNQMVTQTAYDVSISSNSGSLSVP*