Scaffold Ga0068876_10002441

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10002441
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13769
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y
F017101	Metagenome / Metatranscriptome	242	Y
F078287	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100024411	F000369	N/A	IYMEIELADHYDRMNKVVEELLKGNNPTQIASVTGFKRSEVIEYIDEWKQVVRSDSGARERAKEAISGADQHYAMLIKEAWKTVEDADTQGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAELATQLAETERKQDILVKILKEVTATCPKCKMEVAKRLSQITGIVEPVEIIEEVSGS
Ga0068876_1000244115	F013878	AGG	MLNLTELGVEVFIKRAKNIAPYWDNYDLVIWKKNAQGFTDVKGLFRNNSWGIAEKFSVGDNGMWKLPVKYVKHFK*
Ga0068876_1000244117	F000473	GAGG	MFIDKSSEKQKEYFKHGINQWTGEPNKPVFYTEEMKKRVHEIKKPSMLLMDVVMYPDFLALRLYEDNFIQFDGIKKEMVIDYVSKVKKLIESYGVRCELEGKPSERIL*
Ga0068876_1000244118	F011938	GGAGG	VKEYYEVVNIVYIHELQCYGAVENMGAFASTVRYTIEDGTEIEELMENDEFTIIDEIVFTHIEESN*
Ga0068876_1000244120	F002060	N/A	MNIDYTAIVVAIFAAAVSGMGTAVIAGLRDNKKEKIRRAEREQDHLKLELKDLKIELYKIERELTEWKDKYYDAIQELIGVKAELEETLLKLSFIDSQIEKYHPEGELD*
Ga0068876_1000244125	F017101	AGGAG	MDEQKTMTVLEEIIQDTSKALFQKWANALPEDQRSEENLNNLSKNAHESTFFVVKVFMDKFNAAAEELKGTPPTIDQP*
Ga0068876_100024413	F000376	AGAAGG	MSIYQDKAKECKCCGKHVPLPTVLKEYNGILLCPTTFSNVIEYKRIWKSAGNRPAGNIRKHFSDYVQQIVESTIDKNEDGSLQ*
Ga0068876_100024415	F078287	AGGAG	MPYKVEQGVAGCKGYAVVNDKGELKGCHSGRSAALAQMRALYAATADENKMKDKKKKIL*