Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10002192 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10002192 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14691
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (76.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14691

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (76.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028173	Metagenome / Metatranscriptome	192	Y
F045100	Metagenome / Metatranscriptome	153	Y
F077306	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000219215	F077306	GGAG	MAAFDGVTTPAVAVQFLKSGTWTSVTTTDVIQINIRRGRTRQNERDQAGISVVVFNNTSGYYDPDNTSVSNPWVVSGTNILRDGLQMRIVATINSTAYYLYYGFLEETKVNQGEAPSATMTFVDGIAYIADAQAPALAAAANAETAATRVGRMLTLALWGGSSSLTGTVGMLPTVQGRSCMELIYQAVDAIAGRFYISRSGVATLVPLADKFSRPTQLLFTDNQASNTVPYAQLFTNPGTYFVVNQAVIARGDYNQYTSLYTPSSNAYGIAKTVIDAPVATDNNAQNLALYESRKLATPLTYVERIDFNALAVGTYGSLYPDFLSTELADQVSVIRTTYDNRTIQWNLVVEGMAHTITQNNWLVSYTTSAINPYSITI*
Ga0068876_1000219217	F028173	GAG	MADEVIVLTGIKETLDALKEFDKDAVKRFNKVINNELRGAERDAKGLISEDPPMSGWRKADAAKGRTRGGAGWPGWNAGEIKSKITKTKAQGKVRGDYTTSAGALLNKSAAGSIFEVAGRKTQAGFGGGSSAQFLRTIGNRFGKASRVVWRVVDKDRARIEENVARALEQAKADLQKHLNKERA*
Ga0068876_1000219221	F045100	AGGAG	MSYTVTSDNFEAKKKGETITDKELLDLGLNADALVAGEHIKKSAQTKPATVEETK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10002192

Overview

Ecosystem & Geography

Associated Families

Sequences