Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10001928 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10001928 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15703
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (61.54%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15703

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (61.54%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025748	Metagenome / Metatranscriptome	200	Y
F029757	Metagenome	187	N
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F078720	Metagenome / Metatranscriptome	116	Y
F093882	Metagenome / Metatranscriptome	106	N
F103267	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000192823	F025748	AGGA	MEVFALLGEWDYEGSILLGVYASEEEARTAYGVYTRDGDQFIQSYYIEHRVVGAPVDSDRHRIYIG*
Ga0068876_100019283	F078720	N/A	MDKKKVVAGVAGVAVVGILSYLGYRVVKELNELDIDFFGENIEESYYQRYPKKNGDE*
Ga0068876_1000192838	F054874	GGAG	MPNEVKGGTFAPADMPLIKNALFYYKDMLVQSEESERNVSEELSKVASLLHRIGRIA*
Ga0068876_1000192839	F103267	GGAGG	MEVELFAFPTMENPKAVEDTFCDLLNAKRRGESLPVEALDWMDTANNWLLESK*
Ga0068876_1000192841	F047683	AGGA	MTLTVEQIESTYAVPTDATRQNYYPVLAYWIPIELREQVLAAYRETNTRIRLRYRGPRAVSIGREMTRNDNTTYLRSRHRAMQDCLIADATHFTVYDYTGA*
Ga0068876_1000192843	F029757	AGGA	MLTLSDINALTNSRDGDIYSDLYKDVYGSRPRGAQFESLEEFQDDYDFLCNRLDEQIEEERIQQSRNFAAFVERVQETMEIIEGATRERAIEIIAEAEGINEREFDHYGLEILEHELNLKYGSIARWLSE*
Ga0068876_100019288	F093882	GGAG	MTNSDYLTMAENRFASVQRYFPNSSEFNRLFNIILDMTNKMTVEERDQHNAKKIETPAAKAARLKEEQRVLDQMAMNKDSNSI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10001928

Overview

Ecosystem & Geography

Associated Families

Sequences