Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10001807 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10001807 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16317
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (30.77%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16317

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (30.77%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020882	Metagenome / Metatranscriptome	221	Y
F021983	Metagenome / Metatranscriptome	216	Y
F031493	Metagenome / Metatranscriptome	182	Y
F084133	Metagenome / Metatranscriptome	112	Y
F087174	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100018071	F020882	N/A	MSKLQELGDLGDRMMQGLPFAQGGAVSGASDLSTFASPDVSQDPNHFGTLTDKSKITVSAKDSMSKVTPFGPYTGQNPRDYVGDVEKIKYKVTPDEVIMGIDYEMKKLVLKDKQVAKQNVVNNLKKDPQYYSKLHMLDITDEPEKIDETDYRTPQEKAIAEIMRNLHEAKKQRRNWN*
Ga0068876_1000180714	F087174	N/A	MSYYIKDTTINKVVTFNDLNEVVNYLENLCIKKNGKRRKDFMFDMSELGHGYDDPQGINFTNLMSDSFEVGALKKDGRLVRTNIHELARNNKYRSEMGD*
Ga0068876_100018072	F031493	GGA	MANFAKDKPTYRKADPLHKGWHYIGDGRFHDPSVGSDPMRGRRWMIDPGAGSGKSFSKFQQGLKND*
Ga0068876_100018075	F021983	N/A	MNEWPTVPMGNLQAMMVMRQQSAPVSSINAFDPYQAMLRRKQSNTSDDNGYINAEVEQYDPKDIEALEEFCQQYGIMGFNFGKMNPKSTLRMLKNKMGIVEKVNNKKMLLD*
Ga0068876_100018077	F084133	AGGA	MFNNKIQGMNQTPNVNFGLKDTQSVQCTECQGAVFQNGVMFRKVSKILAGTDKDALVPINIPYCVNCLEPLDELLPSELRKQKFSL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10001807

Overview

Ecosystem & Geography

Associated Families

Sequences