Scaffold Ga0068876_10001799

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10001799
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16339
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000763	Metagenome / Metatranscriptome	901	Y
F009401	Metagenome / Metatranscriptome	318	Y
F014015	Metagenome	266	Y
F025013	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000179913	F000763	AGGAG	MNMKNPLVLTAGAFLSAWAASNFDVDYRAILWAVLAGVFGYATPKK*
Ga0068876_1000179915	F025013	GGAG	MNNVTFIEIQSMGETVTHAIIDRGNGEYTSMLKSTYDEMIARNEASTL*
Ga0068876_1000179920	F009401	AGG	MAKLKVTRADGQVGEYSITPLVQYGFEIYAKKGFHKAFIEDQKQSDIYWLAWECIRRSGETVPMFGEKFIETLIDVEVLDDDSPN*
Ga0068876_100017994	F014015	GAG	MGEMIIFDNGNATILGGEFEEPQDIVIYCDLCNEPVAITPRANDEVFITCLKCHAVNHIAVTYTKEPDEPTEP*