Scaffold Ga0068876_10001738

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10001738
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16626
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055561	Metagenome	138	N
F069854	Metagenome	123	N
F095170	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000173810	F069854	N/A	MRNIKKFVRKAYWSALNGTITYKGAPVLCYDTFAPDNANFPYILITNQTQEDDKDNQEYNYITTITLDVVTAGIAPYGRFDADTIADSILQIVCLYPENYLALEVGKIVTAKLVQQTSLSSITDTNIVHREIMTIENWIDG*
Ga0068876_100017386	F055561	N/A	MSFAEYQSIAYGYAMRQSKEENLFRTIWVQLNNVNVTKKSDLIRKPDKYWKIPLLDAKPVVIPTEEEKQRAYQIGLQWQNLKFEEEANFDTVTKTIK*
Ga0068876_100017389	F095170	GGA	MGKVNGSALFVSVGLARIAKSTAYNLSAEMSQLDKTSNESGFFADHISKLGSWSLSSDSLFIQEGYSYGDLYTAYINRERVYLSAGQEDNLTFIGLATIESISQSAPMEQAASISVSFKGVGGLYPTILPAERFIVDELFEIIIDQDGNFLVYT*