Scaffold Ga0068876_10001710

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10001710
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16829
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (59.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012110	Metagenome / Metatranscriptome	283	Y
F045557	Metagenome	152	Y
F085375	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000171020	F012110	N/A	MTKALLLLAWVPLLSVSTPQPKSFPVSISCDAAWELMDIVKNDDVVIQRVEDRLLLELRKDVVNKC*
Ga0068876_1000171036	F045557	N/A	MKTFKQFCTEAYQVQELFGFGQKPKPKPNKQVLAYKNYQPGVLDKSTGKFTQRAHTGDEQKRYGWKPVNVSSYSKADTPGSLTASGHKFDDKQKLVAVPYASKTSSKPSTPFGTKLHMTRAPGVTPVAKTSVQDTGNFGPAGDYNKKTSYDLSLSTARDVVGKPNITAQQFGKQKVYVRNEPQTKPTKKK*
Ga0068876_100017105	F085375	N/A	MLNHIKPNWNIKDFYNLDYVLSTHKDEELVNQYLSSGHSEEKLSIYKYQQPDPMPKCVEEYIIPQFYFLDKVGAAVNYFKPGQYLPLHTDLFGKYLEINNIGSENVIRCMVMLEDNSPGQILQVKDTCYCDWKAGDCFYWNYDEIHAFYNFSMKDRYAIQVTGVLNEQ*