Scaffold Ga0068876_10000888

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000888
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23821
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (37.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021068	Metagenome / Metatranscriptome	220	Y
F034858	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000088818	F021068	GAGG	MQPSDCTIYAVCIPGEKVRYEARSRIVPIMGGAHALSSEERETLRSAGYVFDDENASLSRLNSRWGELSCISWMIVNANENNIGNAQYRRNWLEPEDQWYEENTLYFPEPALFSCTLEQQFYGGHSAFDAPAITRELADSGSWIFSREEIDAIWKQNSFIGCNMARGGNVQYKQFMSALFVALAPIWHKHEEQFLRIGGYDKRALAFIAERLITGMVLYRDKLFPGMNIATAPIGFIH*
Ga0068876_1000088821	F034858	AGGAGG	MILPEGSIRFCISTCKKFAPHTIPVIIPSLLAAGLKPEEILIVNGGQTVRAFTSYKDVPMLLTQQNSFEYTPLIEIVEHSMESQYWFLLHDTCIAGPTFRQLAYEPPVEAPEKVAMKHTPSMSIGLYRYDYLMAHKERLMAIKNTDSSPGALQQWKQWGVPNEDYMLWKLQDVPCHIYHPDKHGPDEWNYQGHADPYGTGMQRRIEYFPQLELAKAKSNWQGVQPHLCIDI*