Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10000805 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	25054
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (97.06%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F045716	Metagenome / Metatranscriptome	152	N
F057318	Metagenome / Metatranscriptome	136	Y
F075713	Metagenome / Metatranscriptome	118	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

679

Metagenome / Metatranscriptome

152

Metagenome / Metatranscriptome

136

Metagenome / Metatranscriptome

118

Protein ID	Family	RBS	Sequence
Ga0068876_1000080513	F075713	AGGAG	VKVKKVLEELNNMPLEADLAIAWYTKEHVEENLQRKITREVWEDVCDYACGEPDMSDFSIQYLIEKMERKEV*
Ga0068876_100008052	F057318	GGAGG	MAKAKNENFQVSATGGAGTNGQPARYTAGIDGAQDFYDLQTSAAMSGQNPAIKQSPSANRSFRTTGQEPFVSLTAPTMRPDEDVRMGATEGLDSMYATDQTAMGEDADRMRQALPYLAVLAELPTTSNSYRNYVRYLKSVL*
Ga0068876_1000080521	F001515	GAG	LAKNSSFDLDFGYGRKGEQLVEELLTQGRTVEVKRDRKWYKTNNLYIETSCYFKKTESWEDSGLAITEAAYWAFVLQVSVIMVPTPTLRYAVQNFGREITCEIPPNLSKGYLITVDDLMTATRKYNDEPTNG*
Ga0068876_1000080528	F045716	AGGAG	MSENTPIQINFKTKKDGMLINLRAQDGAELDLLMSQISERLAALVDLEKTTEGMAVVKNAFPNAQVVGSTPTATPSAGAPDCACGGGTMRFVPAGIAKSTGRPYKAFYACPKPQGQACQNKVPA*

Protein ID

Family

RBS

Sequence

Ga0068876_1000080513

AGGAG

VKVKKVLEELNNMPLEADLAIAWYTKEHVEENLQRKITREVWEDVCDYACGEPDMSDFSIQYLIEKMERKEV*

Ga0068876_100008052

GGAGG

MAKAKNENFQVSATGGAGTNGQPARYTAGIDGAQDFYDLQTSAAMSGQNPAIKQSPSANRSFRTTGQEPFVSLTAPTMRPDEDVRMGATEGLDSMYATDQTAMGEDADRMRQALPYLAVLAELPTTSNSYRNYVRYLKSVL*

Ga0068876_1000080521

GAG

LAKNSSFDLDFGYGRKGEQLVEELLTQGRTVEVKRDRKWYKTNNLYIETSCYFKKTESWEDSGLAITEAAYWAFVLQVSVIMVPTPTLRYAVQNFGREITCEIPPNLSKGYLITVDDLMTATRKYNDEPTNG*

Ga0068876_1000080528

AGGAG

MSENTPIQINFKTKKDGMLINLRAQDGAELDLLMSQISERLAALVDLEKTTEGMAVVKNAFPNAQVVGSTPTATPSAGAPDCACGGGTMRFVPAGIAKSTGRPYKAFYACPKPQGQACQNKVPA*

NMPFamsDB