Scaffold Ga0068876_10000656

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000656
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28079
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (19.15%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F008815	Metagenome / Metatranscriptome	327	Y
F009808	Metagenome	312	N
F092040	Metagenome	107	N
F093872	Metagenome / Metatranscriptome	106	N
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000065613	F009808	N/A	MTITKHHNKMKRNFNNQTFEWLFNDIASSMPKIIFVGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSEKRSPYPAKVAAGATVVSLLELYFSIQGQSTGAEFYAMFIFIGTVICFGYFLEIQFIEKGIEAYGIGMKAPRKRNVSKKEKEPVKMNTTVRSVQLSLAIMLVLAVTTVNGQNNHFMAYNTMSLEKIGDKMLERCYYSEADDSYTVDTIHYDMLDGINLWDGYSRTTYDNCLFMTFGTQQLEYFPLMGIWKHGKKYYDYHDLLKFVSKYVKRNFLNKKINYDEIRRDRSSHEAKWFGSMRD*
Ga0068876_1000065614	F092040	AGTAG	MDYLLFIRFIMEVEMNKYVIKYEDGKSVSVSAKNLEEAIDRFKELRIETATKEIRVMSSWEMFNKNKPKD*
Ga0068876_1000065621	F002778	N/A	MKEWNSKMLEIQAFCEEVNAWITTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIFAQMMMSCIRDMPEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVQKLLLVTSDNYRTLLSSFRQERILVGHMAT*
Ga0068876_1000065627	F003786	N/A	MNLAKYQPHNQDEQSIIESRPNRIANIEPKDAFRNVLNVISSLFPVYGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLVYRRKIIAAHDNEVAALRHNANMEEKARKAREELYANFPTMLKEFKGKDYTSVPLYWYDMCVQFGMIEYEEGEKRALWEEAQALALKEPPESMDLMTIRSHAKKIEQGNTRRAAVIAQQLAVWRKVLKK*
Ga0068876_1000065630	F008078	N/A	MTPKEKANELFTHYHNLIQDIGGELGQEILVSILAKQCALFAAREVLKENIGIPLHPDTYYYWEEVVYEIESYEE*
Ga0068876_1000065647	F093872	N/A	MAQKSIKTKLLQGTLEKSRVKTFTPGEIGEPMFNLDAGEQRIYNRIREHLHIHKAGKQVDEIYLSIAARAIGHLLHNAEILSKDGAVMVHPNGARQVSAEWTAFKQGFELFLELSKTLGLDPKSRLTLE
Ga0068876_100006565	F101173	AGCAG	MAIRFSTTVYNEKSRKITVSIKDSAFSGTVKTFDTLSLGIQYDSESQQGQERFTPIIGSRCSLSLLINNEDLQTLLLDIGLAVEGRFTMELIAYEDDNTTVSFKWYGYIVTDLVEFEDVPLVIGYQAQISAIDGLGWLKTLDYKSAVGPYNGQDTVIQHILNCLNQLDFVQENLVANSLPVLHTIFNWHENTIAYNAASDYSLLTVIQHRAFYHKDTKSNYVYQSCYDVLKKICQTFGARLIFSGNQYWFIQVNEYSRTPATKRYFKYNAFGIQQSGTFTADLTLSNIQTNLPGSDLMRLSGGKWTYYPALKNVVIRYNHFAKQNLLAGVEYNYATNTTPVITTTPTLDASNPDARLSYTGILGFYAQALNPANFEAYQFVFAVKVVSIINSFPLQGFENANWTLGSGWIIDNKILSGVLITTDAYYTTFSVVNGRKYYVKIKVDIDNNGELLLSLGGVNKTITESGDYDYVIIATNTDTLKFSSVSSPRFTGKIKSLEVKQENKYLKRGVNYTSGFNFQLEAASWESSFYEYEFNTETITADAAFVAYKTITFDTLDIPDTAEYIWEMRLKQMRNEAGTSIISNFAVSYLLSNNYLEFLPTGAVSGQSDILEYGSDNDDKSSTVFSLDTYIGDGPSKTTDGGLKVLESGTYENSSSWDVGNGSGFNNVTQLLVNEVIRGQLTPKLRMVDMPFQNLSVDNPYLPHKVIEYSSGYYVFERGSLDLKTEIWQGDYFKIELDA*
Ga0068876_100006566	F008815	N/A	MPNYTERTVLSKPRDFNQVANNAGSGGVVNNNVTETINNVTVTGSAIAIFNQEFLDTNSNVLTWTQNNGKLPTTNLNASIHVYQNGQKLVDSQYTITLPATITIDSNTHYDGSNYIVFAININ*