Scaffold Ga0068876_10000498

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000498
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32138
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (57.69%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F004208	Metagenome / Metatranscriptome	448	Y
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F005478	Metagenome / Metatranscriptome	399	Y
F020347	Metagenome / Metatranscriptome	224	Y
F046343	Metagenome / Metatranscriptome	151	Y
F081279	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000049823	F005478	GAG	MLQYTRTQDLDELMYDDYDLDYTFSNDYNLDEDSYYEHYAQLDVVDLDEEYTRDTQDYDTLAYRHYA*
Ga0068876_1000049831	F000744	GGAGG	MTDANVNLNVHEIGVILSALQLLTNRDENQIAKEYGSAPALYNKLYSVWETLDRSETGLRNDVVPSY*
Ga0068876_1000049842	F004898	GAGG	MDLSEILDEIREIEIYDVDPKDWMGYMKEDDSWDPVPELAY*
Ga0068876_1000049846	F046343	AGG	MTLAKTGSEVLTKEEWEELIALKDAITYAPQTVSAEKMEKFAELMVRSLEGKEDNTPR*
Ga0068876_1000049852	F081279	AGTAGG	MKSNPYWFLEKWGITDSVPMDDVYDRLTQLEDRVRVLEEENIGLTNALYEMENSLDARIDILAEHCRIIPDV*
Ga0068876_1000049857	F004546	N/A	MMDYTEEFPFDQFPWKLIHKDGKETRKCYFQSEEHRKKHIDRYKLNKKDIKLSYKYDD*
Ga0068876_1000049863	F020347	GGA	MSSKTYLQYVAIPALAFFISAIVSYNLTPERTPQHTSTVSGSSGDLVCTSSCKVKDQ*
Ga0068876_1000049867	F004208	N/A	MTYNLNPEAKAFSYTREELFECITKIVAHPHKTITEHDQSRALAIMMVFDDYFTNYTESDNNGGHYVYEQDAIDFISFVRFKLGIAGLPDGIDVDEVLK*