Scaffold Ga0068876_10000451

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000451
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33899
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (23.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011226	Metagenome / Metatranscriptome	293	Y
F011227	Metagenome / Metatranscriptome	293	Y
F034850	Metagenome	173	Y
F041184	Metagenome / Metatranscriptome	160	N
F047481	Metagenome / Metatranscriptome	149	Y
F051129	Metagenome	144	N
F052371	Metagenome	142	Y
F091307	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000045114	F041184	N/A	MASDFRPGKLDIQIWRNDTWQQVFTLLADTTPISLLGATVYIQVRKGCGGTLALSLTNGSGVTIGGVSNNQITVSKLVDIAKGNYVWDMQVTFSGGVVKTYLEGDFVVYDDVTKP*
Ga0068876_1000045116	F011226	N/A	MAKQISPVTIWANGTSKDAEYLQVTGINDNYESSATNYWALFTKVTTDGVDSMGEQVAQGNLTIQGQDYIDWGNQPAMDINTWIYDWVAEQLNLTII*
Ga0068876_1000045119	F011227	N/A	MTLTELKAQAYDILAQIEYLQKQLQETNAKIGEELQKEKNENG*
Ga0068876_1000045120	F047481	GAG	MDSKSIGMCTATILLNVWADIALSDVGIVVAIIAGLSTIAYNVYRLYKEMKS*
Ga0068876_1000045125	F034850	N/A	MEEDLILGEGEEVEDIIEEVGYTYPEYISASVEVLTMLETANPMTREEVQKMQELKKLCLEMLEYSVKNMHKMLFTTDT*
Ga0068876_1000045130	F091307	N/A	MKKQVTTNVRVPAEWLKVSMNDIMIMVTATINDAEDYLDVNVREILMPGYHCLNILPQFHSAFYELVEQKCMDAYTFKMDSEYDHEYYSDYAF*
Ga0068876_1000045137	F052371	GAG	MTTSPRLTDSEQLDLERFKLARVSEKLNTLSIALVIDELIRGMHKLGIKGDKIPNKEELSVMYKSIVEEYPNIKFGELSLAFDLASKGKLDMEAETYQNFSVLYLHRLLRSFARYGMQKLNEIKPVEQESKWQPRYISDDEKIETAFDCYSKFRQWDNIVFGIDVFHILHKRGKIIVEVEDTYDKVIKAMNDRMFQGSRQDKIDIKNKLADDDYLEHQCMRMAVSCYFDKLLKDK*
Ga0068876_1000045146	F051129	N/A	MTQEDEKFIQENIYNFECVKIGFMKNLPLHILVGYEQIYRRYLDPGFILTSWCSNCVADMMKRLINFWDAYQASKLLDTEPVQEPVQAPKKKGRPFKNKQ*