Scaffold Ga0068876_10000353

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000353
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36973
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (27.40%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F007169	Metagenome / Metatranscriptome	356	N
F008080	Metagenome / Metatranscriptome	339	Y
F009682	Metagenome / Metatranscriptome	314	Y
F011485	Metagenome / Metatranscriptome	290	N
F022862	Metagenome / Metatranscriptome	212	N
F024782	Metagenome / Metatranscriptome	204	Y
F038674	Metagenome / Metatranscriptome	165	Y
F060851	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000035316	F009682	AGGAG	MQKDLYMKNPNEKIVVQSDDLKYDGKNIIIPSYYAGVISDYLANVDTQAMNDADKHDFMAFSSFFEAILDYKNNK*
Ga0068876_1000035320	F024782	N/A	MIEKSIERLRAYNEWRTGKDNRTMDEAGIKPRQVTEDIENICNELEKLIKMYASSN*
Ga0068876_1000035323	F022862	N/A	MKFTTEQYNLICQTRDEIRALNNRQHTLYNNLLKELNISIYAEDWMFDYIYNESGSIDDIEARM*
Ga0068876_1000035324	F007169	GAG	MEFDFETPEQKEKRFKALQKQDLEFDKLFGADGDYYTYNKYIDNLIDFLPYRLGWGFKHNWSDLRWWIKCKYQKLRYGVSDDDVFSLETNIAKYIAPRLQYFKKKGKYGIPMKFLPSNYSYLNEEDREKAEKIGEQEMNRILDEMIFAFDYTINPDKYVPFPEESMKWDLKDKNYFNREKTIEEKVAWDDYIKKCEQHDTRKKQGLQLFVDHIDILWL*
Ga0068876_1000035329	F038674	N/A	MSMNRKGFFKTLFGGFVAASAAPSLVKAAETPQPPKDLALGREALRIDEHGNVGLGTNMPTTKLHVEGIIFHINDRMLEMAGDENGNFKIKWLNPKENETANTIVIHKPKDDPWKMNLKRIS*
Ga0068876_1000035330	F008080	N/A	MLKIKIWMRGTMEYSRDTIAGPMPDQTKEMFEEMFIESDECYSGGDVYETCPYFDFEDGRDDIKVYLGGDEYIQNHEEPFFETSDWNQFKFEEGGGCNYVPQEPDNVGEVNIWWSHDMKFNYIYYWSEITEFDPKKLSIQYGVDQRGKKYLEDIMYDGECPDDYHDHGDTGYGYDGPDFIYHPDQKFAEEEEN*
Ga0068876_1000035333	F060851	N/A	MKAILEFNLPEDQRQFEMANQAADMVAAIGHFEDRLRSYIKYGHEFKSANEALESIRALLHEEINLRRINIHDC*
Ga0068876_1000035345	F011485	N/A	MIKYINIIIATLMASVAVFAADTESPVNASINAGYNNHYIVNGLAKTGGQGFAGFNIGSTYFGVDGYVGGVILPDANNIDESHWNVGVGKALKVTEKFSLRGDLQVLRHQSSIVGGRNSIEIAPKIALVNPYLTPYIRGSHDFNLKQSGYIVGVERPTDVFGWVTVTPSVEYGKFTDYDVVAAKIGVSRTFFNHLTPYAEVGWYDNNFSASKYKFASQEFSGDIVATAGVRWNF*
Ga0068876_1000035349	F001732	N/A	MNFKKIFAVFCLFLFTGCFSTIKPAKQIDDNQKIIAKEEKKVDNTLVEIEKNDKGKKIQTSGLSIGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERKKGEELLAQRDDLINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVVSALTTIVVFVIVFVLLRLLATVHPAAAAAFSIFNMLGSAIISILKALTPKAFEMCDFATKEKVDEFKSPLVKIIDVIQELKEKQKESPDRVYPLNELLKRFEKEMDSDEKDLIDDILREQKWIK*