Scaffold Ga0068876_10000325

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000325
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38181
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (63.53%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F002243	Metagenome / Metatranscriptome	578	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004314	Metagenome / Metatranscriptome	444	Y
F004546	Metagenome / Metatranscriptome	433	Y
F007569	Metagenome / Metatranscriptome	348	Y
F009071	Metagenome / Metatranscriptome	323	Y
F013172	Metagenome / Metatranscriptome	273	Y
F020144	Metagenome / Metatranscriptome	225	Y
F020347	Metagenome / Metatranscriptome	224	Y
F023807	Metagenome / Metatranscriptome	208	Y
F027061	Metagenome / Metatranscriptome	196	N
F032934	Metagenome / Metatranscriptome	178	Y
F048809	Metagenome / Metatranscriptome	147	Y
F078408	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000032510	F023807	GAG	MEMVRLVDVKLKYRLELTDEEKEIKDHIMEFQHQVKINEMRDKFEKCLGLDEQG*
Ga0068876_1000032515	F003331	GAG	MTLTEKAQIYKNVWCCAYRRRHAAKLKEDWDLYQREHQTVLMCLKIAKWTIFDSENHHYLKKRKVH*
Ga0068876_1000032516	F001881	GAGG	LTERSQSLMNQIWEARNAGADTEEKLIASVLRIAAENIQFYTAQNDLIVLDKNDMLQLAQELEE*
Ga0068876_1000032524	F009071	AGGAG	MPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEDQCRQYAYDNYTDKEQGEMCLMDWEAREWDV*
Ga0068876_1000032526	F020144	AGGAG	MSNFYTLLPGTDVLRSKIDVFTWTNPADENETHRVELTVDNGGIFVTSCSGGAREDISIEQKDLAIALARAILEAYGVG*
Ga0068876_1000032530	F027061	GGA	MTTRALQILESTMELSMRPKSGDRQKLIARVIREAADRLCTDWGELEHPVDVLNKIADEVEAL*
Ga0068876_1000032531	F020347	GAGG	MSSKTYLQYVAIPALAFFISAIVSYNLTPERTPQHNSTVSGSSGDLKCTSSCVVKEQ*
Ga0068876_1000032538	F007569	GGAGG	MDFTSEQYRLIYTAVRRYQEQSTYDPKTYVECGEVLDELFDSVYTQRREQPT*
Ga0068876_1000032539	F004546	GGAG	MEHTEEFPFDGFPWKLVYKEGNETRKCYFESEAHRQKHIDRYKLKKKDIKLSYKFEE*
Ga0068876_1000032541	F078408	GGA	MTLRTFTDKNGNEWNWEETPEVIAALKAYQKFAGNYPGPLYAPHPYINKDGKETN*
Ga0068876_1000032543	F048809	AGG	MMIRRFVDWFFAPSQKLIVEEIDTYSKLIELQDRITALEAENVETSNCLYELMNSIDAVDARIDILTAEQWIKETKDNV*
Ga0068876_1000032563	F032934	N/A	MMDKPILIKHFARRWYLYWADNGRTIASFPSEFEAYSARRSMIEYNKTGGIS*
Ga0068876_1000032564	F013172	AGGAGG	MSYYWTIKMNNAANRRVEKLTQDGVVVNTSTHEGRKVIGYNYLELAVDYDEVTE*
Ga0068876_1000032569	F002243	GAGG	MIDFPTLQSKDGTMLVGFYPVQTPFGDISTEWCMQILSWKGVDQVSKKYLNRVEKAVAIRERLAYDYVVTGDNQNLPQTGNPFYGAC*
Ga0068876_1000032583	F004314	GAG	MYDDYDLDYTYASDYTYDLDEYYAQDADLDEDYARDGQDYETLAYRHYA*