Scaffold Ga0068876_10000164

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000164
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52031
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025678	Metagenome / Metatranscriptome	200	Y
F058735	Metagenome	134	Y
F105034	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000016412	F058735	N/A	MSNTIKNKTIKFRKALENLSREDLLEIIKLQDVDTVKEINRIEWVFQNKLKHLNWADGSTVTERTLTNRELALLIDEPFEVDYELVDVRHNSRTAKAASFS*
Ga0068876_1000016423	F025678	GGAG	MAFDFVENFTIKLPDFSQSDFSFEEANNLNQGLIIEVAAIHEGLTRKL*
Ga0068876_100001646	F105034	N/A	MNDWKNFINENGDFELPNFLYKTITDLMKQSLDMGTLLSSDQHKLRAYKEQTKKMFKGRWYEIAKALEYFGIIDPCLCAVDDREVYCEVCKGARYIISSTLTADEMREVGLFTNAGTSIDIIEKLQKSLNEIILEG*