Scaffold Ga0068876_10000018

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000018
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 123450
• Total Scaffold Genes: 130
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (39.23%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F008080	Metagenome / Metatranscriptome	339	Y
F008356	Metagenome / Metatranscriptome	334	Y
F028094	Metagenome / Metatranscriptome	192	N
F038674	Metagenome / Metatranscriptome	165	Y
F059677	Metagenome / Metatranscriptome	133	Y
F060851	Metagenome / Metatranscriptome	132	N
F065779	Metagenome / Metatranscriptome	127	Y
F080979	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_10000018115	F059677	N/A	MKEKWLHSFEVEKTQKVKETTTEVNAAGEEIQITKEVEKKVPHKFYILRPNRKIQDEASVFYSVKVSEGIKMGLVTRNYLLRKFQQDGVLPSEEEKKAHAENYSKAIAIEIELEKVRQDSSLSDAEKELKNAALNSEYQVLRQKIFDYENVQNSLFDNTAEKRASDFLNVWFVLNLLYQGEEGSQTCLFGEGSFEQKLERLNQIEESGDEFLSGVVEKGGFLIGQLNSGVPKEELVG*
Ga0068876_1000001823	F008356	N/A	MNISEFERTKPTETHKKIKQLEKLILAEQQKTELLYSNRVATLDKMLVSVRELMDTFKKGE*
Ga0068876_1000001830	F038674	N/A	MNRKDFFKTLFGGFVAASTTPSLAKSEENPQPPKDLALGREVLRVDERGSVGIGGGSGYLGLGTNTPTQALHVSGIIFHINDRKLEMSGDENGNFKIKWLDVKKDECNPAIIIEQPKVDPWKTSLNQIR*
Ga0068876_1000001831	F008080	GGA	MLKIKIWMRGTYEYSRDTIAGPMPDQTQEMFEEMFIESDECYSGGDVYETCPYFDFKDGRDDIKVYLGGDEYIQNHEKPVFETSDWNQFKFEEGGGCNYIPQEPDNVGEVNIWWSHDMKFNYIYYWSEITEFDPKKLTIQYGVDQRGEKYLEEVMYDGQCPDDYHDHGDTGYGYDGPEFVYHPDQKFAEEEED*
Ga0068876_1000001832	F065779	N/A	MDSSSIAISINLKIKDKEVTLSMEEAQNLYSQLKNVLGYNNQPYLIPYPWGAPSPYISYTITSSDTTSSNWKTS*
Ga0068876_1000001833	F060851	N/A	MKAILEFNLPEDQRAFEMANQAPDMVAAIGHFEDKLRSYIKYGHEFKSADEALCSIRALLHDEINIRGINIHD*
Ga0068876_1000001835	F001732	AGG	MKRFLILLIALLASGCFSTVPPARPSTANQQIIDNQEKKLDKTLDQIEKNEKGKKIQTSTLAQGIQYSLTQVTNPPVQVETAKSLNERVVSIVGSPHIDEIKRIKATVDLLNSAIEEERKKGLELLAQRDEIISKLQKEKVELNEKYDDQLWQMSDKAKKVAEEADAAKATLNSMSGMFGLNAVFWGLKKFFLSALTAIIIFSVLFLILRLLATINPIAAAAFSIFDMLGSLIISLFKGLTPKAFEMSNLISKEKFDEYKTPLIKIIDVIQDLKVEQEKHPDKTFSMQNILDQLDRDMDKTEKDLVQQILKELRWKK*
Ga0068876_1000001840	F080979	N/A	MQDDKPINMTKLSSAQEKNYKIVKEGQDFQIGDLIHLVDDEYVKLNKDNQLLKSKVTKYNKVLRKAK*
Ga0068876_1000001842	F028094	N/A	MSRQLEFDFRSPEEIARQKQIAEENAKAFESMFSEDVYVYNKYVDFLLDLIPFRLGWKARNWPREIRWWAKCRYQKFRYGVSDDDVYSLGYNIALFVLPRLKYFKEKGKAGIPVCFLPTNFHVLEGEELERAEAKGLKEMNDVLDEMIFAFEFIIDGDKFCDFPKSFVDKAWSDNSPMTIEEKQGWKEYMERASKLNERKENGLALFAKYYDTLWI*