Scaffold Ga0068876_10000014

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000014
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 154072
• Total Scaffold Genes: 190
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (48.95%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001040	Metagenome / Metatranscriptome	795	Y
F006610	Metagenome / Metatranscriptome	369	Y
F013175	Metagenome / Metatranscriptome	273	Y
F021016	Metagenome / Metatranscriptome	221	Y
F023051	Metagenome	211	Y
F025738	Metagenome / Metatranscriptome	200	Y
F040622	Metagenome / Metatranscriptome	161	Y
F090060	Metagenome / Metatranscriptome	108	Y
F102573	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_10000014168	F102573	N/A	MLSYNVFKPSYANIQISKPLPTDIAEHVLLNSTCHVDHEGFDLNEIEQAYYAHNDIILEHDTTWYKDGDAAKGAHAIIQPWLTQNESSELILDHSQFVFRYPLSGDAANQVKQYAKQRPELLRILSTSFKCGLDLCIDYLTEDRVQPVVHIEWDYNNVQDMLIDVDYVENVLRNTDWNEIISVIKRFNRLSKGSLDAFQQADFRSMLLFGQKSYKLIPTL*
Ga0068876_10000014171	F021016	N/A	MNWIRKIRIGFLHAKYHRNLKRAEAARIDRDVVKFKKYVYQAEDAWRKLVILAEKTK*
Ga0068876_10000014172	F090060	N/A	MGKRSVYTGESAKDRSVNLMDKFITKNNNKAKQHPKLPGRRKDPNVPLELWPLKDQIEYWENRTDADRFDEEYSCYSTWYDEVKRKSGVYPQTFIDFTSKLKPEMRAMWENKVMPRHAVMELRKKGVY*
Ga0068876_1000001436	F006610	AGG	MAYYKFKAKITDDIDDAINIVQMVGKALNEGKTDKASALSNLAAALKKLESARYYIDRE*
Ga0068876_1000001438	F025738	N/A	MKDRKGKNKPAKGFKRLQCKYCDNVSERVDEKADSITCWKCTMKLVNGEILELRK*
Ga0068876_1000001445	F013175	N/A	MDSKTLIQALKRVVREEVRSVIKEELTEILREGLQSTVNEMAQPKKTSNMPGHRNTPSPTSRKPKVQFNENKWASILNETDALVEQGPMAMNSFKDIMNEGMEEIRMTSRDAVNFGAMRQNMKESMGLAPQAPKVMEDPETGKVYEVDPIVQQAMTRDYSGLMKAINKKKGM*
Ga0068876_1000001454	F023051	GGA	MIRLKQILREISDSDIQRCLKKIQNNAFRLIGAGDNGRVYEIDGEDKVFKITKERDEYEVAKRIVNRSDMFTTFIPVYYVDGKNMYIMANASELSTRIKTSIDNFMQDYAVFARENGGEVSIFDFVAETDTIDLVVDNFLNALKTDIEKLDIPEFDLDLDFRSDNVMSWNGNLVMVDW*
Ga0068876_1000001471	F040622	GAG	MMQLHLYSVKMENVGYNMKTPNLKFILETILEDKPQPMSREEKQQFVQEVANFSAMGESVYGKGDLEEIVERVKRIVERAERIMTESDDWASNQAHKKYFKRVSEDYRDFENAAREVNEAQHRMALAYESIGQGLNKYFDVN*
Ga0068876_1000001476	F001040	N/A	MAVPRNKYSMQAIIRYDGRLVDVLDRIRAIRLVLMVHIEQDLGPDKELITLKVMTPYPARQTFQAIRKMCLGKIETLKDMTLRESTLTKLF*