Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10000004 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10000004 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	213065
Total Scaffold Genes	213 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	152 (71.36%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

213065

Total Scaffold Genes

213 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

152 (71.36%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y
F019762	Metagenome / Metatranscriptome	228	Y
F045751	Metagenome / Metatranscriptome	152	Y
F051716	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_10000004147	F019396	N/A	MQWTPYLKLNEEGISSMAQQTYEPLISSDGKIFCKNYSWPNNYQFMYEKERPLYTKEVVDWFFSNELYWIEYFKDSAYAPEVTDIDLINKKIYIKWYGESCNQIIYSGKFWPQQEWRKQIKDIIIDQYSKGVYKLTMYPHCHYIDNNNNMRAIDWYGCVPVNEPYIQEKFMQGIIHETAKFRLDETGSSINNLLNLETMFKRSLNTHVMWGNQNMNYIYKEIFNA*
Ga0068876_10000004154	F051716	AGG	LSTNFEYYYNDVPGKGLCRNNLIYTSLISKDRKTFCQWYHNDTDYHRGQNQIVDPDLMEEKWLREVNYITQMRNTFPHLVPKIINIDLEKRKLYLEIDGVDFWQQADPIKQDYDSVLPNWREQMLEIFKAHTSLGIYKYSLHPSSYFVVNGQLKSINYFFCYRDLDQQISLRSVMSHISEDRQKDLLPKMTAAGIDVNMPTPFKDIQLLAFESFKTNFPSDFMDECKKLYV*
Ga0068876_10000004195	F019762	AGGA	MKLHESVAHTRREMTIKEHDGYRVRMVKHEVLNPKGLFSLELIQESLKDGEVADSQTYNFFMTKEELQALAYGLTQ*
Ga0068876_100000043	F045751	GGAGG	MGTPLYMDMSCAVRLVQEYAEIHTAGDVLAALQDMECCYDDLDKEDRVAYSMFMAAGRKMFAPA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences