Scaffold Ga0073909_10058433

Overview

Basic Information

• Taxon OID: 3300005526
• Scaffold ID: Ga0073909_10058433
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1422
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061879	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073909_100584333	F061879	GGA	MRDKNGIVLVIFLFSIIAFSVSIILQGIQRTDARYEHLADSNNNNLIMNMQAPDNWNSGIVSQTVAKVNWRLNGITATNDDLSGFFIVVNLPSLANFALPLGQKTGLLSWIISHYATINNESEVTLADGSSGHLYSISVSSDQLHRLNAPIDKGFDGVMITTKQQGGTYIILYAAQHGRMGEFKDTFTSMLHSVSFRKSG*