NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068877_10680264

Scaffold Ga0068877_10680264


Overview

Basic Information
Taxon OID3300005525 Open in IMG/M
Scaffold IDGa0068877_10680264 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)552
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019314Metagenome / Metatranscriptome230Y
F020162Metagenome / Metatranscriptome225Y
F085595Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0068877_106802641F020162GAGGVDEDRDYVPRSVTLADFLVVLSGFFVNIVRAVDMLASELLDLAVYNANRTTKVSRVWEQFTQDLEKMEDPNG*
Ga0068877_106802642F019314GGAGGMKKGGRAKAPMAKPTEGKKDMKKPKGGKVAFGYAPAGRKGKKA*
Ga0068877_106802643F085595N/AMAPVPASQPTPEQMGAAPAAGSRPDIASLLASIAG*

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