Scaffold Ga0068877_10288385

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10288385
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 953
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029747	Metagenome / Metatranscriptome	187	Y
F038235	Metagenome	166	N
F039047	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_102883851	F039047	N/A	MKIKTEIDINDIVALKVALGNAERRINELMNDKPDWRKLYDLDKESVEKAKKIVAKLVANS*
Ga0068877_102883852	F029747	AGG	MKYELALETVNCDSFTIYPHTREGLTAAFVRISKERAKEGFQSARIVSDRDGEVFSLDTFVFSL*
Ga0068877_102883853	F038235	N/A	MIREIIAPFERLTYVREDGNQAIYKIFRPTKHLFVNKKNDGGRVVGFRAWKMPNSGSDERMGWRSFRFDRIASRKLTFV*